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2006

Leontis, N B; Lescoute, A; Westhof, E

The building blocks and motifs of RNA architecture Article de journal

Curr Opin Struct Biol, 16 (3), p. 279-287, 2006, ISBN: 16713707, (0959-440X (Print) Journal Article Review).

Résumé | Liens | BibTeX | Étiquettes: Extramural Research Support, Molecular Nucleic Acid Conformation RNA/*chemistry Research Support, N.I.H., Non-U.S. Gov't, Unité ARN, WESTHOF Base Pairing Base Sequence Computational Biology/methods Conserved Sequence *Models

Fender, A; Sauter, C; Messmer, M; Putz, J; Giege, R; Florentz, C; Sissler, M

Loss of a primordial identity element for a mammalian mitochondrial aminoacylation system Article de journal

J Biol Chem, 281 (23), p. 15980-15986, 2006, ISBN: 16597625, (0021-9258 (Print) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/*metabolism Research Support, FLORENTZ, FLORENTZ GIEGE Acylation Base Sequence Humans Kinetics Mutagenesis Nucleic Acid Conformation Plasmids RNA, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

2005

Nielsen, H; Westhof, E; Johansen, S

An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme Article de journal

Science, 309 (5740), p. 1584-1587, 2005, ISBN: 16141078, (1095-9203 (Electronic) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Catalytic/chemistry/*metabolism Research Support, Non-U.S. Gov't, Unité ARN, WESTHOF Base Sequence Catalysis Endonucleases/biosynthesis/*genetics Esterification *Introns Molecular Sequence Data RNA Caps/*chemistry *RNA Splicing RNA

Kisseleva, N; Khvorova, A; Westhof, E; Schiemann, O

Binding of manganese(II) to a tertiary stabilized hammerhead ribozyme as studied by electron paramagnetic resonance spectroscopy Article de journal

RNA, 11 (1), p. 1-6, 2005, ISBN: 15611296, (1355-8382 Letter).

Résumé | Liens | BibTeX | Étiquettes: Catalytic/*chemistry/*metabolism Research Support, Non-U.S. Gov't, Unité ARN, WESTHOF Base Sequence Binding Sites Electron Spin Resonance Spectroscopy Framycetin/chemistry/metabolism Kinetics Manganese/*metabolism Nucleic Acid Conformation RNA

Henriet, S; Richer, D; Bernacchi, S; Decroly, E; Vigne, R; Ehresmann, B; Ehresmann, C; Paillart, J C; Marquet, R

Cooperative and specific binding of Vif to the 5' region of HIV-1 genomic RNA Article de journal

J Mol Biol, 354 (1), p. 55-72, 2005, ISBN: 16236319, (0022-2836 (Print) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: MARQUET, MARQUET 5' Untranslated Regions/chemistry/*metabolism Base Sequence Electrophoretic Mobility Shift Assay Gene Products, Non-U.S. Gov't, PAILLART, Unité ARN, vif/*metabolism HIV Long Terminal Repeat HIV-1/*genetics/*metabolism Hela Cells Humans Molecular Sequence Data Nucleic Acid Conformation Protein Binding RNA, Viral/chemistry/*metabolism RNA-Binding Proteins/metabolism Recombinant Proteins/metabolism Research Support

2004

Ferrandon, Dominique; Imler, Jean-Luc; Hoffmann, Jules A

Sensing infection in Drosophila: Toll and beyond Article de journal

Semin Immunol, 16 , p. 43–53, 2004, ISSN: 1044-5323.

Résumé | BibTeX | Étiquettes: Animals, Carrier Proteins/chemistry/immunology/physiology, Cell Surface/immunology/*physiology, Drosophila Proteins/chemistry/immunology/*physiology, Drosophila/genetics/*immunology/microbiology, ferrandon, Fungi/immunology, Gene Expression Regulation, Gram-Negative Bacterial Infections/immunology, Gram-Positive Bacterial Infections/immunology, hoffmann, imler, Immunological, Insect Proteins/chemistry/immunology/physiology, M3i, Models, Non-U.S. Gov't, Receptors, Signal Transduction/immunology/physiology, Support

Grosjean, H; Keith, G; Droogmans, L

Detection and quantification of modified nucleotides in RNA using thin-layer chromatography incollection

Gott, J M (Ed.): RNA Interference, Editing, and Modification: Methods and Protocols, 265 , p. 357-91, Springer Protocols, Humana Press, 2004.

Résumé | BibTeX | Étiquettes: KEITH 5' Untranslated Regions/chemistry Base Composition Chromatography, Non-U.S. Gov't

Zukiel, R; Nowak, S; Barciszewska, A M; Gawronska, I; Keith, G; Barciszewska, M Z

A simple epigenetic method for the diagnosis and classification of brain tumors Article de journal

Mol Cancer Res, 2 (3), p. 196-202, 2004, ISBN: 15037658, (1541-7786 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Genetic Female Human Male Middle Aged Oxidative Stress Reactive Oxygen Species/metabolism Sensitivity and Specificity Support, KEITH 5-Methylcytosine/*analysis Adult Aged Brain Neoplasms/*classification/*diagnosis/genetics/pathology Chromatography, Neoplasm/*chemistry/*metabolism *Epigenesis, Non-U.S. Gov't, Thin Layer *DNA Methylation DNA, Unité ARN

Zhang, H; Kolb, F A; Jaskiewicz, L; Westhof, E; Filipowicz, W

Single processing center models for human Dicer and bacterial RNase III Article de journal

Cell, 118 (1), p. 57-68, 2004, ISBN: 15242644, (0092-8674 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Support, Double-Stranded/chemistry/*metabolism RNA, Molecular Molecular Sequence Data Molecular Weight Mutagenesis, Non-U.S. Gov't, Post-Transcriptional RNA, Secondary Protein Structure, Site-Directed Mutation Protein Structure, Small Interfering/metabolism Recombinant Proteins/metabolism Ribonuclease III/*chemistry/genetics/isolation & purification/*metabolism Sequence Homology, Tertiary RNA Helicases/*chemistry/genetics/isolation & purification/*metabolism *RNA Processing, Unité ARN, WESTHOF Amino Acid Sequence Base Sequence Comparative Study Conserved Sequence Dimerization Endoribonucleases/*chemistry/genetics/isolation & purification/*metabolism Escherichia coli/enzymology Human Manganese/metabolism MicroRNAs/metabolism Models

Martineau, Y; Bec, Le C; Monbrun, L; Allo, V; Chiu, I M; Danos, O; Moine, H; Prats, H; Prats, A C

Internal ribosome entry site structural motifs conserved among mammalian fibroblast growth factor 1 alternatively spliced mRNAs Article de journal

Mol Cell Biol, 24 (17), p. 7622-7635, 2004, ISBN: 15314170, (0270-7306 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: EHRESMANN *5' Untranslated Regions *Alternative Splicing Animals Base Sequence Cell Line Fibroblast Growth Factor 1/*genetics Gene Transfer Techniques Genes, Messenger/chemistry/*genetics/metabolism Ribosomes/*metabolism Sequence Alignment Support, Non-U.S. Gov't, Site-Directed *Nucleic Acid Conformation *Promoter Regions (Genetics) RNA, Skeletal/cytology/physiology Mutagenesis, Structural/genetics Genetic Vectors Human Mice Molecular Sequence Data Muscle, Unité ARN

Martin, F; Barends, S; Eriani, G

Single amino acid changes in AspRS reveal alternative routes for expanding its tRNA repertoire in vivo Article de journal

Nucleic Acids Res, 32 (13), p. 4081-4089, 2004, ISBN: 15289581, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/chemistry/*metabolism Support, ERIANI, ERIANI Amino Acid Substitution Anticodon/metabolism Aspartate-tRNA Ligase/*chemistry/genetics/*metabolism Aspartic Acid/metabolism Binding Sites Models, Molecular Mutation Phenotype Protein Engineering Protein Structure, Non-U.S. Gov't, Tertiary RNA, Transfer, Unité ARN

Grosjean, H; Keith, G; Droogmans, L

Detection and quantification of modified nucleotides in RNA using thin-layer chromatography Book Chapter

Gott, J M (Ed.): RNA Interference, Editing, and Modification: Methods and Protocols, 265 , p. 357-391, Springer Protocols, Humana Press, 2004, ISBN: 15103084.

Résumé | Liens | BibTeX | Étiquettes: KEITH 5' Untranslated Regions/chemistry Base Composition Chromatography, Non-U.S. Gov't, Unité ARN

de la Pena-Lefebvre, Garcia P; Chanseaud, Y; Tamby, M C; Reinbolt, J; Batteux, F; Allanore, Y; Kahan, A; Meyer, O; Benveniste, O; Boyer, O; Guillevin, L; Boissier, M C; Mouthon, L

IgG reactivity with a 100-kDa tissue and endothelial cell antigen identified as topoisomerase 1 distinguishes between limited and diffuse systemic sclerosis patients Article de journal

Clin Immunol, 111 (3), p. 241-251, 2004, ISBN: 15183145, (1521-6616 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: EHRESMANN Autoantibodies/*analysis Blotting, Non-U.S. Gov't, Polyacrylamide Gel Endothelial Cells/*immunology Enzyme-Linked Immunosorbent Assay Female Human Immunoglobulin G/analysis Immunoglobulin M/analysis Male Middle Aged Scleroderma, Systemic/*immunology Support, Type I/*immunology Electrophoresis, Unité ARN, Western Centromere/immunology DNA Topoisomerases

Fender, A; Geslain, R; Eriani, G; Giege, R; Sissler, M; Florentz, C

A yeast arginine specific tRNA is a remnant aspartate acceptor Article de journal

Nucleic Acids Res, 32 (17), p. 5076-5086, 2004, ISBN: 15452274, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Arg/*chemistry/genetics/metabolism RNA, Asp/*chemistry/genetics/metabolism Saccharomyces cerevisiae/*genetics Sequence Alignment Support, ERIANI, ERIANI FLORENTZ GIEGE Aspartic Acid/metabolism Base Sequence *Evolution, FLORENTZ, Fungal/*chemistry/genetics/metabolism RNA, Molecular Molecular Sequence Data Point Mutation RNA, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

Dubois, D Y; Blaise, M; Becker, H D; Campanacci, V; Keith, G; Giege, R; Cambillau, C; Lapointe, J; Kern, D

An aminoacyl-tRNA synthetase-like protein encoded by the Escherichia coli yadB gene glutamylates specifically tRNAAsp Article de journal

Proc Natl Acad Sci U S A, 101 (20), p. 7530-7535, 2004, ISBN: 15096594, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/*metabolism Support, KERN GIEGE Amino Acyl-tRNA Ligases/chemistry/genetics/*metabolism Crystallography, Messenger/metabolism RNA, Non-U.S. Gov't, Tertiary RNA, Transfer, Unité ARN, X-Ray Escherichia coli/enzymology/genetics/*metabolism Escherichia coli Proteins/chemistry/genetics/*metabolism Glutamic Acid/*metabolism Peptide Elongation Factor 2/metabolism Phylogeny Protein Structure

Charron, C; Giege, R; Lorber, B

Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices Article de journal

Acta Crystallogr D Biol Crystallogr, 60 (Pt 1), p. 83-89, 2004, ISBN: 14684896, (0907-4449 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: GIEGE Comparative Study Crystallization Crystallography, Molecular Plant Proteins/*chemistry Support, Non-U.S. Gov't, Unité ARN, X-Ray Hydrogen Bonding Models

Blaise, M; Becker, H D; Keith, G; Cambillau, C; Lapointe, J; Giege, R; Kern, D

A minimalist glutamyl-tRNA synthetase dedicated to aminoacylation of the tRNAAsp QUC anticodon Article de journal

Nucleic Acids Res, 32 (9), p. 2768-2775, 2004, ISBN: 15150343, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/*metabolism RNA, Bacterial/chemistry/genetics/metabolism RNA, Glu/chemistry/genetics/metabolism Support, KERN Acylation Anticodon/chemistry/genetics/*metabolism Base Sequence Conserved Sequence Escherichia coli/*enzymology/*genetics Evolution Glutamate-tRNA Ligase/*chemistry/genetics/*metabolism Molecular Mimicry Nucleoside Q/genetics/*metabolism Periodic Acid/pharmacology RNA, Non-U.S. Gov't, Transfer, Unité ARN

2003

Kurz, Léopold C; Chauvet, Sophie; Andrès, Emmanuel; Aurouze, Marianne; Vallet, Isabelle; Michel, Gérard P F; Uh, Mitch; Celli, Jean; Filloux, Alain; Bentzmann, Sophie De; Steinmetz, Ivo; Hoffmann, Jules A; Finlay, Brett B; Gorvel, Jean-Pierre; Ferrandon, Dominique; Ewbank, Jonathan J

Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening Article de journal

Embo J, 22 , p. 1451–60, 2003, ISBN: 0261-4189.

Résumé | Liens | BibTeX | Étiquettes: *Virulence, Animal, Caenorhabditis elegans/*microbiology, ferrandon, hoffmann, M3i, Mutation, Non-U.S. Gov't, Serratia marcescens/genetics/*pathogenicity, Support

Zhao, M W; Hao, R; Chen, J F; Martin, F; Eriani, G; Wang, E D

Enzymes assembled from Aquifex aeolicus and Escherichia coli leucyl-tRNA synthetases Article de journal

Biochemistry, 42 (25), p. 7694-7700, 2003, ISBN: 12820878, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl-tRNA Ligases/genetics/*metabolism Escherichia coli/*enzymology Evolution, ERIANI, Horizontal Heat Kinetics Mutation RNA, Leu/*metabolism Structure-Activity Relationship Support, Molecular Gene Transfer, Non-U.S. Gov't, Transfer, Unité ARN

Vicens, Q; Westhof, E

Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide Article de journal

J Mol Biol, 326 (4), p. 1175-1188, 2003, ISBN: 12589761, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/metabolism Support, Anti-Bacterial Agents/*chemistry/metabolism Binding Sites Crystallography, Bacterial Gentamicins/*chemistry/metabolism Human Models, Molecular Molecular Structure *Nucleic Acid Conformation Oligonucleotides/*chemistry/genetics/metabolism Protein Binding *Protein Conformation RNA, Non-U.S. Gov't, Ribosomal, Unité ARN, X-Ray Drug Design Genes

Sauter, C; Basquin, J; Suck, D

Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli Article de journal

Nucleic Acids Res, 31 (14), p. 4091-4098, 2003, ISBN: 12853626, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Support, Amino Acid Sequence Bacteria/*genetics Crystallography, Molecular Host Factor 1 Protein/chemistry/*genetics Molecular Sequence Data Protein Conformation Protein Structure, Non-U.S. Gov't, Secondary Ribonucleoproteins, Small Nuclear/chemistry/*genetics Sequence Alignment Sequence Homology, Unité ARN, X-Ray Dimerization Escherichia coli Proteins/chemistry/*genetics Evolution

Roy, H; Becker, H D; Reinbolt, J; Kern, D

When contemporary aminoacyl-tRNA synthetases invent their cognate amino acid metabolism Article de journal

Proc Natl Acad Sci U S A, 100 (17), p. 9837-9842, 2003, ISBN: 12874385, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Substrate Specificity Support, Amino Acid Sequence Amino Acids/*metabolism Amino Acyl-tRNA Ligases/chemistry/genetics/*metabolism Catalytic Domain/genetics Cloning, Archaeal Genes, Bacterial Models, Molecular Escherichia coli/genetics/metabolism Genes, Molecular Molecular Sequence Data Phylogeny Protein Conformation Pyrococcus/enzymology/genetics Sequence Homology, Non-U.S. Gov't, Unité ARN

Pfister, P; Hobbie, S; Vicens, Q; Bottger, E C; Westhof, E

The molecular basis for A-site mutations conferring aminoglycoside resistance: relationship between ribosomal susceptibility and X-ray crystal structures Article de journal

Chembiochem, 4 (10), p. 1078-1088, 2003, ISBN: 14523926, (1439-4227 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Aminoglycosides/*pharmacology Anti-Bacterial Agents/*pharmacology Binding Sites Comparative Study Crystallography, Bacterial/genetics Ribosomes/*chemistry/drug effects/metabolism Species Specificity Structure-Activity Relationship Support, Molecular Mutagenesis, Non-U.S. Gov't, Site-Directed Nucleic Acid Conformation Oligonucleotides/chemistry/metabolism Plasmids Point Mutation/drug effects RNA, Unité ARN, X-Ray Drug Design Drug Resistance Escherichia coli/genetics/metabolism Hemagglutinins Models

Petit, N; Lescure, A; Rederstorff, M; Krol, A; Moghadaszadeh, B; Wewer, U M; Guicheney, P

Selenoprotein N: an endoplasmic reticulum glycoprotein with an early developmental expression pattern Article de journal

Hum Mol Genet, 12 (9), p. 1045-1053, 2003, ISBN: 12700173, (0964-6906 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Cell Division/physiology Endoplasmic Reticulum/*metabolism Fetus/metabolism Fibroblasts/metabolism Human Muscle Proteins/*metabolism Protein Sorting Signals Support, LESCURE, Non-U.S. Gov't, Unité ARN

Miturski, R; Postawski, K; Semczuk, A; Bogusiewicz, M; Baranowski, W; Jakowicki, J A; Keith, G

Global DNA methylation in relation to hMLH1 and hMSH2 protein immunoreactivity in sporadic human endometrial carcinomas Article de journal

Int J Mol Med, 11 (5), p. 569-574, 2003, ISBN: 12684691, (1107-3756 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Pair Mismatch Carcinoma/genetics/*metabolism/pathology *DNA Methylation DNA Repair Endometrial Neoplasms/genetics/*metabolism/pathology Female Human Immunohistochemistry Neoplasm Proteins/*metabolism Proto-Oncogene Proteins/*metabolism Support, Non-U.S. Gov't, Unité ARN

Heyman, T; Wilhelm, M; Wilhelm, F X

The central PPT of the yeast retrotransposon Ty1 is not essential for transposition Article de journal

J Mol Biol, 331 (2), p. 315-320, 2003, ISBN: 12888340, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA/*biosynthesis Models, Genetic Molecular Sequence Data Mutation Purines/*chemistry Retroelements/*genetics Saccharomyces cerevisiae/genetics Support, Non-U.S. Gov't, Unité ARN

Geslain, R; Martin, F; Camasses, A; Eriani, G

A yeast knockout strain to discriminate between active and inactive tRNA molecules Article de journal

Nucleic Acids Res, 31 (16), p. 4729-4737, 2003, ISBN: 12907713, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl-tRNA Ligases/metabolism Arginine/genetics/metabolism Base Sequence Blotting, Arg/chemistry/*genetics/metabolism Saccharomyces cerevisiae/*genetics Support, ERIANI, Molecular Hydrogen-Ion Concentration Molecular Sequence Data Mutagenesis, Non-U.S. Gov't, Northern Cloning, Site-Directed Mutation Nucleic Acid Conformation RNA, Transfer, Unité ARN

Geslain, R; Bey, G; Cavarelli, J; Eriani, G

Limited set of amino acid residues in a class Ia aminoacyl-tRNA synthetase is crucial for tRNA binding Article de journal

Biochemistry, 42 (51), p. 15092-15101, 2003, ISBN: 14690419, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Acylation Alanine/genetics Amino Acids/*chemistry/genetics Anticodon/chemistry/genetics Arginine-tRNA Ligase/*chemistry/classification/genetics Binding Sites/genetics Genes, Arg/*chemistry Saccharomyces cerevisiae/enzymology/genetics/growth & development Saccharomyces cerevisiae Proteins/*chemistry/*genetics Support, ERIANI, Lethal Mutagenesis, Non-U.S. Gov't, Site-Directed Protein Binding/genetics Protein Structure, Tertiary/genetics RNA, Transfer, Unité ARN

Frugier, M; Giege, R

Yeast aspartyl-tRNA synthetase binds specifically its own mRNA Article de journal

J Mol Biol, 331 (2), p. 375-383, 2003, ISBN: 12888345, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5' Untranslated Regions Amino Acid Motifs Aspartate-tRNA Ligase/*chemistry/metabolism Binding, Competitive Blotting, Drug Gene Expression Regulation, Enzymologic Genes, ERIANI, FRUGIER, Fungal Kinetics Luminescent Proteins/metabolism Plasmids Protein Binding Protein Structure, Messenger/metabolism RNA, Non-U.S. Gov't, Tertiary RNA/metabolism RNA, Transfer/metabolism Saccharomyces cerevisiae/metabolism Support, Unité ARN, Western Dose-Response Relationship

Ennifar, E; Walter, P; Dumas, P

A crystallographic study of the binding of 13 metal ions to two related RNA duplexes Article de journal

Nucleic Acids Res, 31 (10), p. 2671-2682, 2003, ISBN: 12736317, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Binding Sites/genetics Binding, Competitive Cations, Divalent/chemistry/metabolism Cobalt/chemistry/metabolism Comparative Study Crystallization Crystallography, ENNIFAR, Molecular Nucleic Acid Heteroduplexes/*chemistry/genetics/metabolism Oligoribonucleotides/chemistry/genetics/metabolism Platinum Compounds/chemistry/metabolism RNA/*chemistry/genetics/metabolism Ruthenium Compounds/chemistry/metabolism Support, Non-U.S. Gov't, Unité ARN, X-Ray Gold Compounds/chemistry/metabolism Magnesium/chemistry/metabolism Metals/*chemistry/metabolism Models

Du, W; Marsac, C; Kruschina, M; Ortigao, F; Florentz, C

Functionalized self-assembled monolayer on gold for detection of human mitochondrial tRNA gene mutations Article de journal

Anal Biochem, 322 (1), p. 14-25, 2003, ISBN: 14705775, (0003-2697 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Alleles *Gold Human MELAS Syndrome/genetics MERRF Syndrome/genetics Nucleic Acid Hybridization/genetics Oligonucleotide Array Sequence Analysis Point Mutation/*genetics Polymerase Chain Reaction Polymorphism, FLORENTZ, Non-U.S. Gov't, Single Nucleotide/*genetics RNA/*genetics RNA, Transfer/*genetics Support, Unité ARN

Bogengruber, E; Briza, P; Doppler, E; Wimmer, H; Koller, L; Fasiolo, F; Senger, B; Hegemann, J H; Breitenbach, M

Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes Article de journal

FEMS Yeast Res, 3 (1), p. 35-43, 2003, ISBN: 12702244, (1567-1356 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Biogenesis Cell Nucleolus/*metabolism Genes, Non-U.S. Gov't, Suppressor Peptide Initiation Factors/metabolism RNA-Binding Proteins/metabolism/*physiology Ribosomal Proteins/*biosynthesis/genetics Ribosomes/*physiology Saccharomyces cerevisiae/metabolism/*physiology Saccharomyces cerevisiae Proteins/metabolism/*physiology Support, Unité ARN

2002

Gottar, Marie; Gobert, Vanessa; Michel, Tatiana; Belvin, Marcia; Duyk, Geoffrey; Hoffmann, Jules A; Ferrandon, Dominique; Royet, Julien

The Drosophila immune response against Gram-negative bacteria is mediated by a peptidoglycan recognition protein Article de journal

Nature, 416 , p. 640–644, 2002, ISBN: 0028-0836.

Résumé | Liens | BibTeX | Étiquettes: Animal, Anti-Infective Agents/metabolism, Carrier Proteins/biosynthesis/genetics/*immunology, Drosophila melanogaster/genetics/*immunology/*microbiology, Drosophila Proteins/genetics/metabolism, Epistasis, Female, ferrandon, Genes, Genetic, Genetic Predisposition to Disease, Gram-Negative Bacteria/*immunology/physiology, hoffmann, Human, Insect/genetics, M3i, Messenger/genetics/metabolism, Mutation, Non-U.S. Gov't, P.H.S., Phenotype, RNA, Signal Transduction, Support, Survival Rate, Transgenes/genetics, U.S. Gov't

Xu, M G; Chen, J F; Martin, F; Zhao, M W; Eriani, G; Wang, E D

Leucyl-tRNA synthetase consisting of two subunits from hyperthermophilic bacteria Aquifex aeolicus Article de journal

J Biol Chem, 277 (44), p. 41590-41596, 2002, ISBN: 12196521, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacteria/*enzymology Binding Sites Circular Dichroism Cloning, ERIANI, Leu Support, Molecular Enzyme Stability Escherichia coli/enzymology Kinetics Leucine-tRNA Ligase/*chemistry/genetics/isolation & purification Protein Subunits RNA, Non-U.S. Gov't, Transfer, Unité ARN

Waldsich, C; Masquida, B; Westhof, E; Schroeder, R

Monitoring intermediate folding states of the td group I intron in vivo Article de journal

EMBO J, 21 (19), p. 5281-5291, 2002, ISBN: 12356744, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial/chemistry/genetics Escherichia coli/genetics Introns/*physiology Models, Base Sequence DNA, Molecular Molecular Sequence Data *Nucleic Acid Conformation Support, Non-U.S. Gov't, Unité ARN

Wagner, E G; Altuvia, S; Romby, P

Antisense RNAs in bacteria and their genetic elements. Book Chapter

Dunlap, J C; Wu, C.-ting (Ed.): Advances in Genetics: Homology Effects., 46 , p. 361-398, Academic Press, 2002, ISBN: 11931231, (0065-2660 Review Review, Academic).

Résumé | Liens | BibTeX | Étiquettes: Antisense/*genetics/metabolism RNA, Bacteria/*genetics/metabolism Bacteriophages/genetics Chromosomes, Bacterial Models, Bacterial/*genetics/metabolism Support, Bacterial/genetics Conjugation, Genetic DNA Replication/genetics DNA Transposable Elements/genetics Gene Expression Regulation, Genetic Mutation Plasmids/genetics RNA, Non-U.S. Gov't, ROMBY, Unité ARN

van Buuren, B N; Hermann, T; Wijmenga, S S; Westhof, E

Brownian-dynamics simulations of metal-ion binding to four-way junctions Article de journal

Nucleic Acids Res, 30 (2), p. 507-514, 2002, ISBN: 11788713, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Pair Mismatch Base Sequence Binding Sites Cations/*metabolism *Computer Simulation DNA/*chemistry/genetics/*metabolism Diffusion Electrostatics Metals/*metabolism Models, Biomolecular *Nucleic Acid Conformation Nucleic Acid Hybridization RNA/chemistry/genetics/metabolism Recombination, Genetic/*genetics Support, Molecular Nuclear Magnetic Resonance, Non-U.S. Gov't, Unité ARN

Rabilloud, T; Strub, J M; Carte, N; Luche, S; Dorsselaer, Van A; Lunardi, J; Giege, R; Florentz, C

Comparative proteomics as a new tool for exploring human mitochondrial tRNA disorders Article de journal

Biochemistry, 41 (1), p. 144-150, 2002, ISBN: 11772011, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Cell Line Cell Nucleus/physiology Comparative Study DNA, FLORENTZ, Gel, Inborn/*metabolism Human Mitochondria/*metabolism Mitochondrial Proteins/*metabolism Molecular Sequence Data *Point Mutation Proteome RNA/*genetics RNA, Mitochondrial/physiology Electrophoresis, Non-U.S. Gov't, Transfer/*genetics Support, Two-Dimensional/methods Genetic Diseases, Unité ARN

Perederina, A; Nevskaya, N; Nikonov, O; Nikulin, A; Dumas, P; Yao, M; Tanaka, I; Garber, M; Gongadze, G; Nikonov, S

Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex Article de journal

RNA, 8 (12), p. 1548-1557, 2002, ISBN: 12515387, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5S/*chemistry/*metabolism Ribosomal Proteins/*chemistry/*metabolism Support, Amino Acid Sequence Bacterial Proteins/chemistry/metabolism Base Sequence Binding Sites Escherichia coli/genetics Hydrogen Bonding Models, Molecular Molecular Sequence Data Nucleic Acid Conformation Peptide Fragments/chemistry/metabolism Protein Conformation RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

Lindell, M; Romby, P; Wagner, E G

Lead(II) as a probe for investigating RNA structure in vivo Article de journal

RNA, 8 (4), p. 534-541, 2002, ISBN: 11991646, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Biochemistry/*methods Comparative Study Lead/*chemistry/*metabolism Molecular Sequence Data Nucleic Acid Conformation Porins/genetics RNA/*chemistry/*metabolism RNA, Messenger/chemistry/metabolism Support, Non-U.S. Gov't, ROMBY, Unité ARN

Lescure, A; Gautheret, D; Krol, A

Novel selenoproteins identified from genomic sequence data Article de journal

Methods Enzymol, 347 , p. 57-70, 2002, ISBN: 11898439, (0076-6879 Journal Article).

Liens | BibTeX | Étiquettes: 3' Untranslated Regions Animals COS Cells Codon/genetics DNA Transposable Elements DNA, Complementary/genetics Databases, Human Human Nucleic Acid Conformation Proteins/*genetics RNA, LESCURE, Messenger/chemistry/genetics Selenium Radioisotopes Support, Non-U.S. Gov't, Nucleic Acid Genome, Unité ARN

Lescure, A; Allmang, C; Yamada, K; Carbon, P; Krol, A

cDNA cloning, expression pattern and RNA binding analysis of human selenocysteine insertion sequence (SECIS) binding protein 2 Article de journal

Gene, 291 (1-2), p. 279-285, 2002, ISBN: 12095701, (0378-1119 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Support, Amino Acid Sequence Blotting, Complementary/chemistry/genetics Female Gene Expression Human Male Molecular Sequence Data Peptide Elongation Factors/metabolism Protein Binding RNA/*metabolism RNA, DNA Sequence Homology, LESCURE, Messenger/genetics/metabolism RNA-Binding Proteins/genetics/*metabolism Sequence Alignment Sequence Analysis, Molecular DNA, Non-U.S. Gov't, Northern Cloning, Unité ARN

Fournier, C; Cortay, J C; Carbonnelle, C; Ehresmann, C; Marquet, R; Boulanger, P

The HIV-1 Nef protein enhances the affinity of reverse transcriptase for RNA in vitro Article de journal

Virus Genes, 25 (3), p. 255-269, 2002, ISBN: 12881637, (0920-8569 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Binding Sites Electrophoretic Mobility Shift Assay Gene Products, MARQUET, nef/*metabolism HIV-1/*genetics/metabolism Human In Vitro Molecular Sequence Data Protein Footprinting RNA/genetics/*metabolism RNA-Directed DNA Polymerase/*metabolism Support, Non-U.S. Gov't, Unité ARN

Florentz, C

Molecular investigations on tRNAs involved in human mitochondrial disorders Article de journal

Biosci Rep, 22 (1), p. 81-98, 2002, ISBN: 12418552, (0144-8463 Journal Article Review Review Literature).

Résumé | Liens | BibTeX | Étiquettes: FLORENTZ, Human Mitochondrial Diseases/*genetics/*physiopathology Mutation Nucleic Acid Conformation RNA, Non-U.S. Gov't, Transfer/*chemistry/*genetics Support, Unité ARN

Allmang, C; Carbon, P; Krol, A

The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: identification of SBP2 amino acids important to SECIS RNA binding Article de journal

RNA, 8 (10), p. 1308-1318, 2002, ISBN: 12403468, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Spliceosomes/metabolism Structural Homology, Amino Acid Sequence Amino Acid Substitution Binding Sites Human Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Non-U.S. Gov't, Protein Support, Small Nuclear/chemistry/*metabolism RNA-Binding Proteins/genetics/*metabolism Ribonucleoproteins, Small Nuclear/genetics/*metabolism Selenocysteine/metabolism Sequence Homology, Unité ARN

2001

Zenkova, M; Beloglazova, N; Sil'nikov, V; Vlassov, V; Giege, R

RNA cleavage by 1,4-diazabicyclo[2.2.2]octane-imidazole conjugates Article de journal

Methods Enzymol, 341 , p. 468-490, 2001, ISBN: 11582799, (0076-6879 Journal Article).

Liens | BibTeX | Étiquettes: Aza Compounds/*chemistry Base Sequence Bicyclo Compounds/*chemistry Catalysis Comparative Study Imidazoles/*chemistry Kinetics Molecular Sequence Data Nucleic Acid Conformation Oligoribonucleotides/chemistry Phosphorus Radioisotopes RNA/chemistry/*metabolism RNA, Messenger/chemistry Radioisotope Dilution Technique Ribonuclease, Non-U.S. Gov't, Pancreatic/metabolism Support, Unité ARN

Vortler, S; Putz, J; Giege, R

Manipulation of tRNA properties by structure-based and combinatorial in vitro approaches Article de journal

Prog Nucleic Acid Res Mol Biol, 70 , p. 291-334, 2001, ISBN: 11642365, (0079-6603 Journal Article Review Review, Academic).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence *Combinatorial Chemistry Techniques In Vitro Molecular Mimicry Nucleic Acid Conformation RNA, Non-U.S. Gov't, Transfer/*chemistry/*metabolism Support, Unité ARN

Tishchenko, S; Nikulin, A; Fomenkova, N; Nevskaya, N; Nikonov, O; Dumas, P; Moine, H; Ehresmann, B; Ehresmann, C; Piendl, W; Lamzin, V; Garber, M; Nikonov, S

Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii Article de journal

J Mol Biol, 311 (2), p. 311-324, 2001, ISBN: 11478863, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/*metabolism RNA-Binding Proteins/chemistry/metabolism Ribosomal Proteins/*chemistry/*metabolism Ribosomes/chemistry/genetics/metabolism Sequence Alignment Substrate Specificity Support, Amino Acid Sequence Archaeal Proteins/chemistry/metabolism Bacteria/chemistry/genetics Base Sequence Binding Sites Conserved Sequence/genetics Crystallography, Archaeal/chemistry/genetics/metabolism RNA, Molecular Human Hydrogen Bonding Methanococcus/*chemistry/*genetics Models, Molecular Molecular Sequence Data Nucleic Acid Conformation Protein Binding Protein Structure, Non-U.S. Gov't, Ribosomal, Secondary RNA, Unité ARN, X-Ray Evolution

Senger, B; Lafontaine, D L; Graindorge, J S; Gadal, O; Camasses, A; Sanni, A; Garnier, J M; Breitenbach, M; Hurt, E; Fasiolo, F

The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis Article de journal

Mol Cell, 8 (6), p. 1363-1373, 2001, ISBN: 11779510, (1097-2765 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Biological Transport Cell Division Cell Nucleolus/*metabolism Cell Nucleus/*metabolism Conserved Sequence Cytoplasm/enzymology/*metabolism Enzyme Activation GTP Phosphohydrolases/chemistry/genetics/*metabolism Gene Deletion Genes, Fungal/chemistry/genetics/metabolism RNA, Non-U.S. Gov't, Post-Transcriptional RNA, Reporter/genetics Molecular Weight Phenotype Protein Subunits RNA Precursors/chemistry/genetics/metabolism *RNA Processing, Ribosomal/chemistry/genetics/metabolism Ribosomes/chemistry/*metabolism Saccharomyces cerevisiae/cytology/genetics/growth & development/*metabolism Saccharomyces cerevisiae Proteins/chemistry/genetics/metabolism Support, Unité ARN

Schiffer, S; Helm, M; Théobald-Dietrich, A; Giege, R; Marchfelder, A

The plant tRNA 3' processing enzyme has a broad substrate spectrum Article de journal

Biochemistry, 40 (28), p. 8264-8272, 2001, ISBN: 11444972, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Non-U.S. Gov't, Plant/genetics/*metabolism RNA, Post-Transcriptional RNA, Transfer, Tyr/genetics/*metabolism Substrate Specificity/genetics Support, Unité ARN

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