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2005

Lescoute, A; Leontis, N B; Massire, C; Westhof, E

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments Article de journal

Nucleic Acids Res, 33 (8), p. 2395-2409, 2005, ISBN: 15860776, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Molecular Nucleic Acid Conformation RNA, Non-U.S. Gov't Research Support, Nucleic Acid, P.H.S. *Sequence Alignment Sequence Analysis, Ribosomal/*chemistry Research Support, RNA/*methods Sequence Homology, U.S. Gov't, Unité ARN, WESTHOF Base Pairing Models

Champagne, K S; Sissler, M; Larrabee, Y; Doublie, S; Francklyn, C S

Activation of the hetero-octameric ATP phosphoribosyl transferase through subunit interface rearrangement by a tRNA synthetase paralog Article de journal

J Biol Chem, 280 (40), p. 34096-34104, 2005, ISBN: 16051603, (0021-9258 (Print) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Extramural Research Support, FLORENTZ ATP Phosphoribosyltransferase/*metabolism Allosteric Regulation Amino Acyl-tRNA Synthetases DNA Mutational Analysis Enzyme Activation *Models, N.I.H., Non-P.H.S. Research Support, P.H.S., SISSLER, Structural Phosphates/metabolism Research Support, U.S. Gov't, Unité ARN

Castellano, S; Lobanov, A V; Chapple, C; Novoselov, S V; Albrecht, M; Hua, D; Lescure, A; Lengauer, T; Krol, A; Gladyshev, V N; Guigo, R

Diversity and functional plasticity of eukaryotic selenoproteins: identification and characterization of the SelJ family Article de journal

Proc Natl Acad Sci U S A, 102 (45), p. 16188-16193, 2005, ISBN: 16260744, (0027-8424 (Print) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Extramural Research Support, KROL Adenosine Diphosphate Ribose/metabolism Animals Fish Proteins/chemistry/genetics/*physiology Genome Mice NIH 3T3 Cells Phylogeny Promoter Regions (Genetics) Proteome Research Support, LESCURE, N.I.H., Non-P.H.S. Selenoproteins/chemistry/genetics/*physiology Tetraodontiformes/*genetics, Non-U.S. Gov't Research Support, U.S. Gov't, Unité ARN

2004

Wagner, C; Ehresmann, C; Ehresmann, B; Brunel, C

Mechanism of dimerization of bicoid mRNA: initiation and stabilization Article de journal

J Biol Chem, 279 (6), p. 4560-4569, 2004, ISBN: 14607826, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: BRUNEL Animals Base Sequence Dimerization Drosophila Proteins/*genetics Drosophila melanogaster/embryology/*genetics/*metabolism Homeodomain Proteins/*genetics Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA Interference RNA Stability RNA, Messenger/chemistry/*genetics/*metabolism Support, Non-U.S. Gov't Support, P.H.S. Thermodynamics Trans-Activators/*genetics, U.S. Gov't, Unité ARN

Sohm, B; Sissler, M; Park, H; King, M P; Florentz, C

Recognition of human mitochondrial tRNALeu(UUR) by its cognate leucyl-tRNA synthetase Article de journal

J Mol Biol, 339 (1), p. 17-29, 2004, ISBN: 15123417, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Cultured, FLORENTZ, FLORENTZ *Acylation Base Sequence Comparative Study Human Kinetics Leucine/metabolism Leucine-tRNA Ligase/genetics/*metabolism Mitochondria/*metabolism Molecular Sequence Data Mutation Nucleic Acid Conformation Osteosarcoma/metabolism RNA/*genetics/metabolism RNA, Genetic/*genetics Tumor Cells, Leu/genetics/*metabolism Solutions Substrate Specificity Support, Non-U.S. Gov't Support, P.H.S. Transcription, SISSLER, Transfer, U.S. Gov't, Unité ARN

Serra, M J; Smolter, P E; Westhof, E

Pronounced instability of tandem IU base pairs in RNA Article de journal

Nucleic Acids Res, 32 (5), p. 1824-1828, 2004, ISBN: 15037659, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Non-P.H.S. Thermodynamics Uracil/*chemistry, U.S. Gov't, Unité ARN, WESTHOF Base Pairing Inosine/*chemistry Magnesium/chemistry Nucleic Acid Conformation RNA/*chemistry RNA Stability Support

Rangan, P; Masquida, B; Westhof, E; Woodson, S A

Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA Article de journal

J Mol Biol, 339 (1), p. 41-51, 2004, ISBN: 15123419, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial/*chemistry/genetics/*metabolism RNA, Ile/chemistry/*genetics Substrate Specificity Support, Molecular Molecular Sequence Data *Nucleic Acid Conformation RNA Precursors/*genetics RNA Splice Sites/genetics RNA Splicing RNA, Non-U.S. Gov't Support, P.H.S., Transfer, U.S. Gov't, Unité ARN, WESTHOF Azoarcus/enzymology/*genetics Base Sequence Binding Sites Exoribonucleases/metabolism Hydroxyl Radical/metabolism Introns/*genetics Magnesium/chemistry Models

Mathy, N; Pellegrini, O; Serganov, A; Patel, D J; Ehresmann, C; Portier, C

Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation Article de journal

Mol Microbiol, 52 (3), p. 661-675, 2004, ISBN: 15101974, (0950-382x Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/genetics/*metabolism Recombinant Fusion Proteins/metabolism Ribosomal Proteins/chemistry/*genetics/*metabolism Sequence Alignment Support, Bacterial Models, EHRESMANN Amino Acid Sequence Base Sequence Escherichia coli Proteins/chemistry/genetics/*metabolism Gene Expression Regulation, Messenger/metabolism RNA, Molecular *Molecular Mimicry Molecular Sequence Data Mutagenesis, Non-U.S. Gov't Support, P.H.S., Ribosomal, Secondary RNA, Site-Directed Nucleic Acid Conformation Protein Structure, U.S. Gov't, Unité ARN

Levinger, L; Oestreich, I; Florentz, C; Morl, M

A pathogenesis-associated mutation in human mitochondrial tRNALeu(UUR) leads to reduced 3'-end processing and CCA addition Article de journal

J Mol Biol, 337 (3), p. 535-544, 2004, ISBN: 15019775, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: FLORENTZ, FLORENTZ Human Kinetics Mitochondrial Diseases/*genetics Nucleic Acid Conformation *Point Mutation RNA/*genetics/physiology *RNA 3' End Processing RNA Nucleotidyltransferases/metabolism RNA, Leu/*genetics/physiology Support, Non-U.S. Gov't Support, P.H.S., Transfer, U.S. Gov't, Unité ARN

Levinger, L; Mörl, M; Florentz, C

Mitochondrial tRNA 3' end metabolism and human disease Article de journal

Nucleic Acids Res, 32 (18), p. 5430-5441, 2004, ISBN: 15477393, (1362-4962 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: FLORENTZ, Non-U.S. Gov't Support, P.H.S., Transfer/chemistry/*genetics/*metabolism Support, U.S. Gov't, Unité ARN

2003

Yang, H; Jossinet, F; Leontis, N; Chen, L; Westbrook, J; Berman, H; Westhof, E

Tools for the automatic identification and classification of RNA base pairs Article de journal

Nucleic Acids Res, 31 (13), p. 3450-3460, 2003, ISBN: 12824344, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Algorithms Base Pairing Base Sequence Computer Graphics Data Interpretation, Molecular Nucleic Acid Conformation RNA/*chemistry/classification *Software Support, Non-P.H.S. Support, Non-U.S. Gov't Support, Nucleic Acid Internet Models, P.H.S., Statistical Databases, U.S. Gov't, Unité ARN

Wilhelm, F X; Wilhelm, M; Gabriel, A

Extension and cleavage of the polypurine tract plus-strand primer by Ty1 reverse transcriptase Article de journal

J Biol Chem, 278 (48), p. 47678-47684, 2003, ISBN: 14500728, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA/chemistry DNA Primers DNA Replication Models, Calf Thymus/chemistry Support, Genetic, Genetic Molecular Sequence Data Purines/*chemistry RNA/chemistry RNA, Messenger/metabolism RNA, Non-U.S. Gov't Support, P.H.S. Templates, U.S. Gov't, Unité ARN, Viral RNA-Directed DNA Polymerase/*chemistry Recombinant Proteins/chemistry Retroelements/*genetics Ribonuclease H

Tsai, H Y; Masquida, B; Biswas, R; Westhof, E; Gopalan, V

Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme Article de journal

J Mol Biol, 325 (4), p. 661-675, 2003, ISBN: 12507471, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Base Sequence Catalytic Domain Computer Simulation Cysteine/chemistry DNA Footprinting DNA, Bacterial/chemistry/genetics/metabolism RNA, Bacterial/genetics Edetic Acid Endoribonucleases/*chemistry/genetics/metabolism Escherichia coli/*enzymology/genetics Evolution, Catalytic/*chemistry/genetics/metabolism Ribonuclease P Support, Molecular Ferrous Compounds Holoenzymes/chemistry/genetics/metabolism Hydroxyl Radical/chemistry Models, Molecular Molecular Sequence Data Mutagenesis, Non-P.H.S. Support, P.H.S., Site-Directed Nucleic Acid Conformation Protein Subunits RNA, U.S. Gov't, Unité ARN

Thisse, C; Degrave, A; Kryukov, G V; Gladyshev, V N; Obrecht-Pflumio, S; Krol, A; Thisse, B; Lescure, A

Spatial and temporal expression patterns of selenoprotein genes during embryogenesis in zebrafish Article de journal

Gene Expr Patterns, 3 (4), p. 525-532, 2003, ISBN: 12915322, (1567-133x Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Animals Gene Expression Regulation, Developmental In Situ Hybridization Molecular Sequence Data Proteins/*genetics/metabolism RNA Probes RNA, LESCURE, Messenger/metabolism Support, Non-U.S. Gov't Support, P.H.S. Tissue Distribution Zebrafish/*embryology, U.S. Gov't, Unité ARN

Serganov, A; Polonskaia, A; Ehresmann, B; Ehresmann, C; Patel, D J

Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA Article de journal

EMBO J, 22 (8), p. 1898-1908, 2003, ISBN: 12682022, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial Proteins/genetics/metabolism Binding Sites *Nucleic Acid Conformation Protein Binding Protein Footprinting RNA, Genetic, Messenger/chemistry/*metabolism Repressor Proteins/genetics/*metabolism Ribosomal Proteins/genetics/*metabolism Ribosomes/metabolism Support, P.H.S. Thermus thermophilus/genetics/metabolism *Translation, U.S. Gov't, Unité ARN

Rangan, P; Masquida, B; Westhof, E; Woodson, S A

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme Article de journal

Proc Natl Acad Sci U S A, 100 (4), p. 1574-1579, 2003, ISBN: 12574513, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Azoarcus/*enzymology Base Sequence Introns Magnesium/chemistry Models, Catalytic/*chemistry/genetics Support, Molecular Molecular Sequence Data Nucleic Acid Conformation *Protein Folding Protein Structure, Non-U.S. Gov't Support, P.H.S., Tertiary RNA, U.S. Gov't, Unité ARN

Levinger, L; Giege, R; Florentz, C

Pathology-related substitutions in human mitochondrial tRNA(Ile) reduce precursor 3' end processing efficiency in vitro Article de journal

Nucleic Acids Res, 31 (7), p. 1904-1912, 2003, ISBN: 12655007, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA, FLORENTZ, Ile/*genetics/metabolism Support, Mitochondrial/*genetics Endoribonucleases/metabolism Hela Cells Human Kinetics Molecular Sequence Data Mutation RNA Precursors/genetics/metabolism *RNA Processing, Non-U.S. Gov't Support, P.H.S., Post-Transcriptional RNA, Transfer, U.S. Gov't, Unité ARN

Leontis, N B; Westhof, E

Analysis of RNA motifs Article de journal

Curr Opin Struct Biol, 13 (3), p. 300-308, 2003, ISBN: 12831880, (0959-440x Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: *Base Pairing Binding Sites Magnetic Resonance Imaging *Nucleic Acid Conformation RNA/*chemistry RNA, Chloroplast/chemistry Support, P.H.S., U.S. Gov't, Unité ARN

Frugier, M; Giege, R; Schimmel, P

RNA recognition by designed peptide fusion creates "artificial" tRNA synthetase Article de journal

Proc Natl Acad Sci U S A, 100 (13), p. 7471-7475, 2003, ISBN: 12796515, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Motifs Amino Acid Sequence Amino Acyl-tRNA Ligases/*chemistry Base Sequence Binding Sites Catalytic Domain Escherichia coli/genetics/metabolism *Genetic Techniques Kinetics Models, ERIANI, FRUGIER, Genetic Molecular Sequence Data Mutation Nucleic Acid Conformation Peptides/*chemistry Protein Binding Protein Structure, Non-U.S. Gov't Support, P.H.S. Time Factors, Tertiary RNA/chemistry Recombinant Fusion Proteins/metabolism Support, U.S. Gov't, Unité ARN

2002

Gottar, Marie; Gobert, Vanessa; Michel, Tatiana; Belvin, Marcia; Duyk, Geoffrey; Hoffmann, Jules A; Ferrandon, Dominique; Royet, Julien

The Drosophila immune response against Gram-negative bacteria is mediated by a peptidoglycan recognition protein Article de journal

Nature, 416 , p. 640–644, 2002, ISBN: 0028-0836.

Résumé | Liens | BibTeX | Étiquettes: Animal, Anti-Infective Agents/metabolism, Carrier Proteins/biosynthesis/genetics/*immunology, Drosophila melanogaster/genetics/*immunology/*microbiology, Drosophila Proteins/genetics/metabolism, Epistasis, Female, ferrandon, Genes, Genetic, Genetic Predisposition to Disease, Gram-Negative Bacteria/*immunology/physiology, hoffmann, Human, Insect/genetics, M3i, Messenger/genetics/metabolism, Mutation, Non-U.S. Gov't, P.H.S., Phenotype, RNA, Signal Transduction, Support, Survival Rate, Transgenes/genetics, U.S. Gov't

Wilhelm, M; Fishman, J A; Pontikis, R; Aubertin, A M; Wilhelm, F X

Susceptibility of recombinant porcine endogenous retrovirus reverse transcriptase to nucleoside and non-nucleoside inhibitors Article de journal

Cell Mol Life Sci, 59 (12), p. 2184-2190, 2002, ISBN: 12568344, (1420-682x Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Animals Chlorides/metabolism Cloning, Calf Thymus/metabolism Sodium Chloride/metabolism Support, Non-U.S. Gov't Support, P.H.S. Swine, U.S. Gov't, Unité ARN

Waugh, A; Gendron, P; Altman, R; Brown, J W; Case, D; Gautheret, D; Harvey, S C; Leontis, N; Westbrook, J; Westhof, E; Zuker, M; Major, F

RNAML: a standard syntax for exchanging RNA information Article de journal

RNA, 8 (6), p. 707-717, 2002, ISBN: 12088144, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: *Databases, Non-P.H.S. Support, Non-U.S. Gov't Support, Nucleic Acid *Nucleic Acid Conformation Programming Languages RNA/*chemistry Support, P.H.S., U.S. Gov't, Unité ARN

Serra, M J; Baird, J D; Dale, T; Fey, B L; Retatagos, K; Westhof, E

Effects of magnesium ions on the stabilization of RNA oligomers of defined structures Article de journal

RNA, 8 (3), p. 307-323, 2002, ISBN: 12003491, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Pairing Heat Hydrogen Bonding Magnesium/*pharmacology Models, Molecular Nucleic Acid Conformation RNA/*metabolism RNA Stability/*drug effects Support, Non-P.H.S. Support, Non-U.S. Gov't Support, P.H.S. Thermodynamics, U.S. Gov't, Unité ARN

Mohr, S; Leikauf, G D; Keith, G; Rihn, B H

Microarrays as cancer keys: an array of possibilities Article de journal

J Clin Oncol, 20 (14), p. 3165-3175, 2002, ISBN: 12118031, (0732-183x Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Animals Chromosome Aberrations *Gene Expression Profiling/methods *Gene Expression Regulation, DNA/methods Support, Neoplastic Genotype Human Mutation Neoplasms/*genetics *Oligonucleotide Array Sequence Analysis/methods Oncogenes/*genetics Polymorphism (Genetics) Proteome/genetics *Sequence Analysis, P.H.S., U.S. Gov't, Unité ARN

Leontis, N B; Stombaugh, J; Westhof, E

The non-Watson-Crick base pairs and their associated isostericity matrices Article de journal

Nucleic Acids Res, 30 (16), p. 3497-3531, 2002, ISBN: 12177293, (1362-4962 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Algorithms *Base Pairing Base Sequence Hydrogen Bonding Models, Molecular RNA/*chemistry/classification/genetics Sequence Homology Support, Non-P.H.S. Support, P.H.S. Terminology, U.S. Gov't, Unité ARN

Leontis, N B; Stombaugh, J; Westhof, E

Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules Article de journal

Biochimie, 84 (9), p. 961-973, 2002, ISBN: 12458088, (0300-9084 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial/*chemistry/genetics RNA, Base Pairing Base Sequence Catalytic Domain Conserved Sequence Databases, Factual Models, Molecular *Nucleic Acid Conformation RNA, Non-P.H.S. Support, P.H.S., Ribosomal/*chemistry/genetics Sequence Alignment Support, U.S. Gov't, Unité ARN

2001

Wilhelm, M; Uzun, O; Mules, E H; Gabriel, A; Wilhelm, F X

Polypurine tract formation by Ty1 RNase H Article de journal

J Biol Chem, 276 (50), p. 47695-47701, 2001, ISBN: 11595735, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Binding Sites DNA/metabolism DNA Primers/pharmacology Hydrolysis Molecular Sequence Data Mutation Protein Binding *Purines RNA/metabolism RNA-Directed DNA Polymerase/*chemistry/*metabolism Recombinant Proteins/metabolism *Retroelements Ribonuclease H, Calf Thymus/*chemistry/*genetics/metabolism Support, Non-U.S. Gov't Support, P.H.S. Time Factors, U.S. Gov't, Unité ARN

Webb, A E; Rose, M A; Westhof, E; Weeks, K M

Protein-dependent transition states for ribonucleoprotein assembly Article de journal

J Mol Biol, 309 (5), p. 1087-1100, 2001, ISBN: 11399081, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Allosteric Site Base Sequence Catalysis Catalytic Domain Fungal Proteins/*metabolism Hydroxyl Radical/metabolism Introns/genetics Iodine/metabolism Kinetics Models, Catalytic/chemistry/genetics/metabolism RNA-Binding Proteins/*metabolism Ribonucleoproteins/chemistry/*genetics/*metabolism Saccharomyces cerevisiae/enzymology/genetics *Saccharomyces cerevisiae Proteins Support, Molecular Neurospora crassa *Nucleic Acid Conformation Protein Binding RNA/chemistry/genetics/metabolism RNA Splicing/*genetics RNA Stability RNA, Non-U.S. Gov't Support, P.H.S., U.S. Gov't, Unité ARN

Senger, B; Despons, L; Walter, P; Jakubowski, H; Fasiolo, F

Yeast cytoplasmic and mitochondrial methionyl-tRNA synthetases: two structural frameworks for identical functions Article de journal

J Mol Biol, 311 (1), p. 205-216, 2001, ISBN: 11469869, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Acylation Amino Acid Sequence Binding Sites Coenzyme A/metabolism Comparative Study Cysteine/genetics/metabolism Cytoplasm/*enzymology Genes, Fungal/genetics Genetic Complementation Test Homocysteine/genetics/metabolism Kinetics Methionine/metabolism Methionine-tRNA Ligase/*chemistry/genetics/*metabolism Mitochondria/*enzymology Molecular Sequence Data Mutation/genetics Protein Transport RNA, Met/genetics/metabolism Saccharomyces cerevisiae/cytology/*enzymology/genetics Sequence Alignment Structure-Activity Relationship Support, Non-P.H.S. Zinc/metabolism Zinc Fingers/genetics/physiology, Non-U.S. Gov't Support, Transfer, U.S. Gov't, Unité ARN

2000

Tzou, P; Ohresser, S; Ferrandon, Dominique; Capovilla, Maria; Reichhart, Jean-Marc; Lemaitre, Bruno; Hoffmann, Jules A; Imler, Jean-Luc

Tissue-specific inducible expression of antimicrobial peptide genes in Drosophila surface epithelia Article de journal

Immunity, 13 , p. 737–48., 2000, ISSN: 1074-7613.

Résumé | BibTeX | Étiquettes: *Genes, Animal, Anti-Infective Agents/*immunology/metabolism, Drosophila/genetics/*immunology, ferrandon, Gene Expression Regulation/*immunology, Genes, Glycoside Hydrolases/immunology, hoffmann, Human, imler, Insect, Insect Proteins/genetics/immunology, M3i, Non-U.S. Gov't, Organ Specificity, P.H.S., reichhart, Reporter, Support, Transfection, U.S. Gov't

Moine, H; Squires, C L; Ehresmann, B; Ehresmann, C

In vivo selection of functional ribosomes with variations in the rRNA-binding site of Escherichia coli ribosomal protein S8: evolutionary implications Article de journal

Proc Natl Acad Sci U S A, 97 (2), p. 605-610, 2000, ISBN: 10639126, (0027-8424http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10639126 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/genetics/metabolism Recombinant Fusion Proteins/genetics/metabolism Ribosomal Proteins/genetics/*metabolism Ribosomes/genetics/*metabolism Spectinomycin/pharmacology Support, Base Sequence Binding Sites/genetics Binding, Competitive Cell Division/genetics Cloning, Microbial Escherichia coli/drug effects/*genetics/metabolism Evolution, Molecular Drug Resistance, Molecular Protein Binding RNA, P.H.S. Variation (Genetics), Ribosomal, Ribosomal/genetics/*metabolism RNA, U.S. Gov't, Unité ARN

Libri, D; Lescure, A; Rosbash, M

Splicing enhancement in the yeast rp51b intron Article de journal

RNA, 6 (3), p. 352-368, 2000, ISBN: 10744020, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5' Untranslated Regions/genetics DNA Mutational Analysis Introns/*genetics Multigene Family Nucleic Acid Conformation RNA Splicing/*genetics *Regulatory Sequences, LESCURE, Non-U.S. Gov't Support, Nucleic Acid Ribonucleoprotein, P.H.S. Uridine/metabolism, U.S. Gov't, U1 Small Nuclear/chemistry/genetics Saccharomyces cerevisiae/*genetics Support, Unité ARN

Costa, M; Michel, F; Westhof, E

A three-dimensional perspective on exon binding by a group II self-splicing intron Article de journal

EMBO J, 19 (18), p. 5007-5018, 2000, ISBN: 10990464, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Catalysis *Exons Hydroxyl Radical *Introns Kinetics *Models, Catalytic/metabolism Support, Genetic, Genetic Molecular Sequence Data Nucleic Acid Conformation *RNA Splicing RNA, Non-U.S. Gov't Support, P.H.S. Temperature Transcription, U.S. Gov't, Unité ARN

Becker, H D; Roy, H; Moulinier, L; Mazauric, M H; Keith, G; Kern, D

Thermus thermophilus contains an eubacterial and an archaebacterial aspartyl-tRNA synthetase Article de journal

Biochemistry, 39 (12), p. 3216-3230, 2000, ISBN: 10727213, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Support, Asn/genetics/metabolism RNA, Asp/metabolism Sequence Alignment Sequence Homology, Molecular Consensus Sequence Escherichia coli/enzymology/genetics Human Kinetics Molecular Sequence Data Peptide Fragments/chemistry RNA, Non-U.S. Gov't Support, P.H.S. Thermus thermophilus/*enzymology/genetics, Transfer, U.S. Gov't, Unité ARN

1999

Perreau, V M; Keith, G; Holmes, W M; Przykorska, A; Santos, M A; Tuite, M F

The Candida albicans CUG-decoding ser-tRNA has an atypical anticodon stem-loop structure Article de journal

J Mol Biol, 293 (5), p. 1039-1053, 1999, ISBN: 10547284, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon/*chemistry/*genetics/metabolism Base Sequence Candida albicans/*genetics Evolution, Fungal/chemistry/genetics/metabolism RNA, Molecular Genetic Code/genetics Imidazoles/metabolism Lead/metabolism Methylation Mutation/genetics *Nucleic Acid Conformation Nucleosides/genetics/metabolism RNA, Non-P.H.S. Support, Non-U.S. Gov't Support, P.H.S. tRNA Methyltransferases/metabolism, Ser/*chemistry/*genetics/metabolism Ribonucleases/metabolism Saccharomyces cerevisiae/genetics Solutions Support, Transfer, U.S. Gov't, Unité ARN

1997

Redlak, M; Andraos-Selim, C; Giege, R; Florentz, C; Holmes, W M

Interaction of tRNA with tRNA (guanosine-1)methyltransferase: binding specificity determinants involve the dinucleotide G36pG37 and tertiary structure Article de journal

Biochemistry, 36 (29), p. 8699-8709, 1997, ISBN: 9220956, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon/metabolism Base Sequence Binding Sites Dinucleoside Phosphates/*metabolism Escherichia coli Kinetics Molecular Sequence Data *Nucleic Acid Conformation Poly G/*metabolism RNA, FLORENTZ, Non-P.H.S. tRNA Methyltransferases/isolation & purification/*metabolism, Non-U.S. Gov't Support, Transfer/chemistry/*metabolism Substrate Specificity Support, U.S. Gov't, Unité ARN

Ng, J D; Lorber, B; Giege, R; Koszelak, S; Day, J; Greenwood, A; McPherson, A

Comparative analysis of thaumatin crystals grown on earth and in microgravity Article de journal

Acta Crystallogr D Biol Crystallogr, 53 (Pt 6), p. 724-733, 1997, ISBN: 11540583, (0907-4449 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Comparative Study Crystallization Crystallography/instrumentation/methods Crystallography, Non-P.H.S. Sweetening Agents/*chemistry *Weightlessness, Non-U.S. Gov't Support, U.S. Gov't, Unité ARN, X-Ray Particle Size Plant Proteins/*chemistry Space Flight/*instrumentation Support

1996

Yusupova, G; Lanchy, J M; Yusupov, M; Keith, G; Grice, Le S F; Ehresmann, C; Ehresmann, B; Marquet, R

Primer selection by HIV-1 reverse transcriptase on RNA-tRNA(3Lys) and DNA-tRNA(3Lys) hybrids Article de journal

J Mol Biol, 261 (3), p. 315-321, 1996, ISBN: 8780773, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA, Lys/genetics/*metabolism RNA, MARQUET, Non-U.S. Gov't Support, P.H.S., Post-Transcriptional RNA, Transfer, U.S. Gov't, Unité ARN, Viral/genetics HIV-1/*enzymology/genetics HIV-1 Reverse Transcriptase Human Molecular Sequence Data *RNA Processing, Viral/genetics RNA-Directed DNA Polymerase/genetics/*metabolism Support

Westhof, E; Wesolowski, D; Altman, S

Mapping in three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent Article de journal

J Mol Biol, 258 (4), p. 600-613, 1996, ISBN: 8636995, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial Proteins/chemistry/metabolism Base Sequence Coenzymes/*chemistry/drug effects Computer Simulation Edetic Acid/*pharmacology Endoribonucleases/*chemistry/drug effects Escherichia coli/chemistry Ferrous Compounds/*pharmacology Magnesium/pharmacology Models, Bacterial/*chemistry/drug effects RNA, Catalytic/*chemistry/drug effects RNA, Molecular Molecular Sequence Data *Nucleic Acid Conformation Protein Binding RNA, Non-U.S. Gov't Support, P.H.S., Transfer/chemistry/metabolism Ribonuclease P Support, U.S. Gov't, Unité ARN

Lanchy, J M; Ehresmann, C; Grice, Le S F; Ehresmann, B; Marquet, R

Binding and kinetic properties of HIV-1 reverse transcriptase markedly differ during initiation and elongation of reverse transcription Article de journal

EMBO J, 15 (24), p. 7178-7187, 1996, ISBN: 9003793, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: DNA Primers HIV-1/*enzymology HIV-1 Reverse Transcriptase/*metabolism Kinetics Protein Binding Support, Genetic, Genetic *Transcription, MARQUET, Non-U.S. Gov't Support, P.H.S. Templates, U.S. Gov't, Unité ARN

Holmes, C E; Abraham, A T; Hecht, S M; Florentz, C; Giege, R

Fe.bleomycin as a probe of RNA conformation Article de journal

Nucleic Acids Res, 24 (17), p. 3399-3406, 1996, ISBN: 8811095, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry RNA, Binding Sites Bleomycin/*analogs & derivatives/chemistry Models, FLORENTZ, Fungal/*chemistry RNA, Messenger/chemistry RNA, Molecular *Molecular Probes *Nucleic Acid Conformation RNA Precursors/chemistry RNA, Non-U.S. Gov't Support, P.H.S., Phe/chemistry Support, Transfer, Transfer/*chemistry RNA, U.S. Gov't, Unité ARN

Caprara, M G; Lehnert, V; Lambowitz, A M; Westhof, E

A tyrosyl-tRNA synthetase recognizes a conserved tRNA-like structural motif in the group I intron catalytic core Article de journal

Cell, 87 (6), p. 1135-1145, 1996, ISBN: 8978617, (0092-8674 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Binding Sites/genetics Conserved Sequence Evolution *Introns Molecular Sequence Data Neurospora crassa Nucleic Acid Conformation Protein Conformation Protein Structure, Fungal/chemistry/metabolism/physiology RNA, Non-U.S. Gov't Support, P.H.S. Tyrosine-tRNA Ligase/*chemistry/*genetics/metabolism, Tertiary RNA Splicing/physiology RNA, Transfer, Tyr/chemistry Support, U.S. Gov't, Unité ARN

Arts, E J; Stetor, S R; Li, X; Rausch, J W; Howard, K J; Ehresmann, B; North, T W; Wohrl, B M; Goody, R S; Wainberg, M A; Grice, S F

Initiation of (-) strand DNA synthesis from tRNA(3Lys) on lentiviral RNAs: implications of specific HIV-1 RNA-tRNA(3Lys) interactions inhibiting primer utilization by retroviral reverse transcriptases Article de journal

Proc Natl Acad Sci U S A, 93 (19), p. 10063-10068, 1996, ISBN: 8816751, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/chemistry/*metabolism RNA, Animals Base Sequence Cats DNA, Equine/genetics/*metabolism Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA, Genetic, Non-U.S. Gov't Support, P.H.S. Templates, Transfer, U.S. Gov't, Unité ARN, Viral HIV-1/genetics/*metabolism Horses Human Infectious Anemia Virus, Viral/*biosynthesis Genome, Viral/chemistry/*metabolism RNA-Directed DNA Polymerase/*metabolism SIV/genetics/*metabolism Support

Arts, E J; Ghosh, M; Jacques, P S; Ehresmann, B; Grice, Le S F

Restoration of tRNA3Lys-primed(-)-strand DNA synthesis to an HIV-1 reverse transcriptase mutant with extended tRNAs. Implications for retroviral replication Article de journal

J Biol Chem, 271 (15), p. 9054-9061, 1996, ISBN: 8621554, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA, Calf Thymus/metabolism Sequence Deletion Structure-Activity Relationship Support, Complementary/biosynthesis DNA, Lys/*chemistry RNA-Directed DNA Polymerase/genetics/*metabolism Recombinant Proteins Ribonuclease H, Non-U.S. Gov't Support, P.H.S., Transfer, U.S. Gov't, Unité ARN, Viral/*biosynthesis HIV-1 Reverse Transcriptase Hydrogen Bonding Molecular Sequence Data Nucleic Acid Conformation RNA

1995

O'Connor, M; Brunelli, C A; Firpo, M A; Gregory, S T; Lieberman, K R; Lodmell, J S; Moine, H; Ryk, Van D I; Dahlberg, A E

Genetic probes of ribosomal RNA function Article de journal

Biochem Cell Biol, 73 (11-12), p. 859-868, 1995, ISBN: 8722001, (0829-8211 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: 16S/genetics RNA, Base Sequence Molecular Sequence Data Mutation Nucleic Acid Conformation RNA Probes RNA, Messenger/genetics RNA, Non-U.S. Gov't Support, P.H.S., Ribosomal, Ribosomal/*genetics RNA, Transfer/genetics Support, U.S. Gov't, Unité ARN

1994

Westhof, E; Altman, S

Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli Article de journal

Proc Natl Acad Sci U S A, 91 (11), p. 5133-5137, 1994, ISBN: 7515186, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Bacterial/*chemistry/metabolism RNA, Base Sequence Computer Graphics Computer Simulation Endoribonucleases/*chemistry/metabolism Escherichia coli/*enzymology Molecular Sequence Data *Nucleic Acid Conformation RNA, Catalytic/*chemistry/metabolism Ribonuclease P Substrate Specificity Support, Non-U.S. Gov't Support, P.H.S., U.S. Gov't, Unité ARN

Moine, H; Dahlberg, A E

Mutations in helix 34 of Escherichia coli 16 S ribosomal RNA have multiple effects on ribosome function and synthesis Article de journal

J Mol Biol, 243 (3), p. 402-412, 1994, ISBN: 7966269, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics Ribosomes/*metabolism Support, Base Sequence Codon, Genetic beta-Galactosidase/genetics, Non-U.S. Gov't Support, P.H.S. *Translation, Ribosomal, Terminator Escherichia coli/*genetics/growth & development Molecular Sequence Data *Mutation *Nucleic Acid Conformation RNA, U.S. Gov't, Unité ARN

Frugier, M; Soll, D; Giege, R; Florentz, C

Identity switches between tRNAs aminoacylated by class I glutaminyl- and class II aspartyl-tRNA synthetases Article de journal

Biochemistry, 33 (33), p. 9912-9921, 1994, ISBN: 8060999, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Acylation Aspartate-tRNA Ligase/chemistry/*metabolism Base Sequence Crystallization Escherichia coli/*enzymology/genetics Glutamate-tRNA Ligase/chemistry/*metabolism Kinetics Molecular Sequence Data Molecular Structure Mutation Nucleic Acid Conformation RNA, Asp/chemistry/*metabolism RNA, ERIANI, FLORENTZ, FRUGIER, Gln/chemistry/*metabolism Saccharomyces cerevisiae/*enzymology/genetics Support, Non-U.S. Gov't Support, P.H.S., Transfer, U.S. Gov't, Unité ARN

1993

Wohrl, B M; Ehresmann, B; Keith, G; Grice, Le S F

Nuclease footprinting of human immunodeficiency virus reverse transcriptase/tRNA(Lys-3) complexes Article de journal

J Biol Chem, 268 (18), p. 13617-13624, 1993, ISBN: 7685766, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon Base Sequence HIV-1/*enzymology HIV-1 Reverse Transcriptase Hydrolysis Molecular Sequence Data Nucleic Acid Conformation RNA, Double-Stranded/metabolism RNA, Lys/chemistry/*metabolism RNA-Directed DNA Polymerase/*metabolism Recombinant Proteins/metabolism Ribonuclease, Non-U.S. Gov't Support, P.H.S., Pancreatic/metabolism Support, Transfer, U.S. Gov't, Unité ARN

Schimmel, P; Giege, R; Moras, D; Yokoyama, S

An operational RNA code for amino acids and possible relationship to genetic code Article de journal

Proc Natl Acad Sci U S A, 90 (19), p. 8763-8768, 1993, ISBN: 7692438, (0027-8424 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: *Amino Acid Sequence Amino Acids/*metabolism Amino Acyl-tRNA Ligases/metabolism Base Sequence Conserved Sequence Escherichia coli/enzymology/genetics *Genetic Code Nucleic Acid Conformation Oligoribonucleotides RNA/*genetics RNA, Non-U.S. Gov't Support, P.H.S., Transfer/*genetics/metabolism Support, U.S. Gov't, Unité ARN

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