Publications
2016 |
Auffinger, P; D'Ascenzo, L; Ennifar, E Sodium and Potassium Interactions with Nucleic Acids Book Chapter Sigel, A; Sigel, H; Sigel, R (Ed.): The Alkali Metal Ions: Their Role for Life, 16 , p. 167-201, Springer, 2016, ISBN: 26860302. Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ENNIFAR DNA Hydration K+ Metal binding Molecular dynamics simulations Monovalent ions Na+·NMR Potassium RNA Sodium Solvation X-ray crystallography, Unité ARN @inbook{, title = {Sodium and Potassium Interactions with Nucleic Acids}, author = {P Auffinger and L D'Ascenzo and E Ennifar}, editor = {A Sigel and H Sigel and R Sigel}, url = {http://www.ncbi.nlm.nih.gov/pubmed/26860302?dopt=Abstract}, doi = {10.1007/978-3-319-21756-7_6}, isbn = {26860302}, year = {2016}, date = {2016-01-01}, booktitle = {The Alkali Metal Ions: Their Role for Life}, volume = {16}, pages = {167-201}, publisher = {Springer}, series = {Metal Ions in Life Sciences}, abstract = {Metal ions are essential cofactors for the structure and functions of nucleic acids. Yet, the early discovery in the 70s of the crucial role of Mg(2+) in stabilizing tRNA structures has occulted for a long time the importance of monovalent cations. Renewed interest in these ions was brought in the late 90s by the discovery of specific potassium metal ions in the core of a group I intron. Their importance in nucleic acid folding and catalytic activity is now well established. However, detection of K(+) and Na(+) ions is notoriously problematic and the question about their specificity is recurrent. Here we review the different methods that can be used to detect K(+) and Na(+) ions in nucleic acid structures such as X-ray crystallography, nuclear magnetic resonance or molecular dynamics simulations. We also discuss specific versus non-specific binding to different structures through various examples.}, keywords = {ENNIFAR, ENNIFAR DNA Hydration K+ Metal binding Molecular dynamics simulations Monovalent ions Na+·NMR Potassium RNA Sodium Solvation X-ray crystallography, Unité ARN}, pubstate = {published}, tppubtype = {inbook} } Metal ions are essential cofactors for the structure and functions of nucleic acids. Yet, the early discovery in the 70s of the crucial role of Mg(2+) in stabilizing tRNA structures has occulted for a long time the importance of monovalent cations. Renewed interest in these ions was brought in the late 90s by the discovery of specific potassium metal ions in the core of a group I intron. Their importance in nucleic acid folding and catalytic activity is now well established. However, detection of K(+) and Na(+) ions is notoriously problematic and the question about their specificity is recurrent. Here we review the different methods that can be used to detect K(+) and Na(+) ions in nucleic acid structures such as X-ray crystallography, nuclear magnetic resonance or molecular dynamics simulations. We also discuss specific versus non-specific binding to different structures through various examples. |