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2020

Wolff, P; Villette, C; Zumsteg, J; Heintz, D; Antoine, L; Chane-Woon-Ming, B; Droogmans, L; Grosjean, H; Westhof, E

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea Article de journal

RNA, p. in press, 2020, ISBN: 32994183.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN, WESTHOF, WESTHOF ENNIFAR (hyper)thermophiles Archaea mass spectrometry modifications tRNA

Westhof, E; Liang, S; Tong, X; Ding, X; Zheng, L; Dai, F

Unusual tertiary pairs in eukaryotic tRNA-Ala Article de journal

RNA, p. in press, 2020, ISBN: 32737189.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF Ala Gly insects mammals tRNA.

Trzaska, C; Amand, S; Bailly, C; Leroy, C; Marchand, V; Duvernois-Berthet, E; Saliou, J M; Benhabiles, H; Werkmeister, E; Chassat, T; Guilbert, R; Hannebique, D; Mouray, A; Copin, M C; Moreau, P A; Adriaenssens, E; Kulozik, A; Westhof, E; Tulasne, D; Motorin, Y; Rebuffat, S; Lejeune, F

2,6-Diaminopurine as a Highly Potent Corrector of UGA Nonsense Mutations Article de journal

Nat Commun, 11 (1), p. 1509, 2020, ISBN: 32198346.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Magnus, M; Antczak, M; Zok, T; Wiedemann, J; Lukasiak, P; Cao, Y; Bujnicki, J M; Westhof, E; Szachniuk, M; Miao, Z

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools Article de journal

Nucleic Acids Res, 48 (2), p. 576-588, 2020, ISBN: 31799609.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Pernod, K; Schaeffer, L; Chicher, J; Hok, E; Rick, C; Geslain, R; Eriani, G; Westhof, E; Ryckelynck, M; Martin, F

The Nature of the Purine at Position 34 in tRNAs of 4-codon Boxes Is Correlated With Nucleotides at Positions 32 and 38 to Maintain Decoding Fidelity Article de journal

Nucleic Acids Res, 48 (11), p. 6170-6183, 2020, ISBN: 32266934.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, ERIANI RYCKELYNCK WESTHOF, RYCKELYNCK, Unité ARN, WESTHOF

Miao, Z; Adamiak, R W; Antczak, M; Boniecki, M J; Bujnicki, J M; Chen, S J; Cheng, C Y; Cheng, Y; Chou, F C; Das, R; Dokholyan, N V; Ding, F; Geniesse, C; Jiang, Y; Joshi, A; Krokhotin, A; Magnus, M; Mailhot, O; Major, F; Mann, T H; Piatkowski, P; Pluta, R; Popenda, M; Sarzynska, J; Sun, L; Szachniuk, M; Tian, S; Wang, J; Wang, J; Watkins, A M; Wiedemann, J; Xiao, Y; Xu, X; Yesselman, J D; Zhang, D; Zhang, Y; Zhang, Z; Zhao, C; Zhao, P; Zhou, Y; Zok, T; Zyla, A; Ren, A; Batey, R T; Golden, B L; Huang, L; Lilley, D M; Liu, Y; Patel, D J; Westhof, E

RNA-Puzzles Round IV: 3D Structure Predictions of Four Ribozymes and Two Aptamers Article de journal

RNA, 26 (8), p. 982-995, 2020, ISBN: 32371455.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF RNA structure aptamer modeing prediction ribozyme

2019

Rozov, A; Khusainov, I; Omari, El K; Duman, R; Mykhaylyk, V; Yusupov, M; Westhof, E; Wagner, A; Yusupova, G

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction Article de journal

Nat Commun, 10 (1), p. 2519, 2019, ISBN: 31175275.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Westhof, E; Yusupov, M; Yusupova, G

The multiple flavors of GoU pairs in RNA Article de journal

J Mol Recognit, p. e2782, 2019, ISBN: 31033092.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF GoU pair anticodon codon mRNA miscoding ribosome tRNA tautomer

Westhof, E

Pseudouridines or how to draw on weak energy differences Article de journal

Biochem Biophys Res Commun, 520 (4), p. 702-704, 2019, ISBN: 31761086.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF RNA

Shcherbakov, D; Teo, Y; Boukari, H; Cortes-Sanchon, A; Mantovani, M; Osinnii, I; Moore, J; Juskeviciene, R; Brilkova, M; Duscha, S; Kumar, H S; Laczko, E; Rehrauer, H; Westhof, E; Akbergenov, R; Böttger, E C

Ribosomal mistranslation leads to silencing of the unfolded protein response and increased mitochondrial biogenesis Article de journal

Commun Biol, 2 , p. 381, 2019, ISBN: 31637312.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF Protein folding Protein transport Transcriptomics

Antoine, L; Wolff, P; Westhof, E; Romby, P; Marzi, S

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS Article de journal

Biochimie, 164 , p. 60-69, 2019, ISBN: 31295507.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ENNIFAR ROMBY WESTHOF 2D gel isolation Staphylococcus aureus nanoLC/MSMS post-transcriptional tRNA modifications, ROMBY, Unité ARN, WESTHOF

2018

Tosar, J P; Gámbaro, F; Darré, L; Pantano, S; Westhof, E; Cayota, A

Dimerization confers increased stability to nucleases in 5' halves from glycine and glutamic acid tRNAs Article de journal

Nucleic Acids Res, 46 (17), p. 9081-9093, 2018, ISBN: 29893896.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Reinharz, V; Soulé, A; Westhof, E; Waldispühl, J; Denise, A

Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families Article de journal

Nucleic Acids Res, 46 (8), p. 3841-3851, 2018, ISBN: 29608773.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Patel, D; Westhof, E

Editorial overview: Protein nucleic acid interactions: order, ambiguities and disorder in recognition and complex formation between proteins and nucleic acids Article de journal

Curr Opin Struct Biol, 53 , p. vi-viii, 2018, ISBN: 30553297.

Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Hoernes, T P; Faserl, K; Juen, M A; Kremser, J; Gasser, C; Fuchs, E; Shi, X; Siewert, A; Lindner, H; Kreutz, C; Micura, R; Joseph, S; Höbartner, C; Westhof, E; Hüttenhofer, A; Erlacher, M D

Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions Article de journal

Nat Commun, 9 (1), p. 4865, 2018, ISBN: 30451861.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Rozov, A; Wolff, P; Grosjean, H; Yusupov, M; Yusupova, G; Westhof, E

Tautomeric G*U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria Article de journal

Nucleic Acids Res, 46 (14), p. 7425-7435, 2018, ISBN: 29931292.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN, WESTHOF

Hosseini, M; Roy, P; Sissler, M; Zirbel, C L; Westhof, E; Leontis, N

How to fold and protect mitochondrial ribosomal RNA with fewer guanines Article de journal

Nucleic Acids Res, 46 (20), p. 10946-10968, 2018, ISBN: 30215760.

Résumé | Liens | BibTeX | Étiquettes: SISSLER, Unité ARN, WESTHOF

Akbergenov, R; Duscha, S; Fritz, A K; Juskeviciene, R; Oishi, N; Schmitt, K; Shcherbakov, D; Teo, Y; Boukari, H; Freihofer, P; Isnard-Petit, P; Oettinghaus, B; Frank, S; Thiam, K; Rehrauer, H; Westhof, E; Schacht, J; Eckert, A; Wolfer, D; Böttger, E C

Mutant MRPS5 affects mitoribosomal accuracy and confers stress-related behavioral alterations Article de journal

EMBO Rep, 19 (11), p. e46193, 2018, ISBN: 30237157.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF aging disease misreading mitochondria protein synthesis

2017

Sissler, M; González-Serrano, L E; Westhof, E

Recent Advances in Mitochondrial Aminoacyl-tRNA Synthetases and Disease Article de journal

Trends Mol Med, 23 (8), p. 693-708, 2017, ISBN: 28716624.

Résumé | Liens | BibTeX | Étiquettes: SISSLER, SISSLER RYCKELYNCK WESTHOF aminoacyl-tRNA synthetase central nervous system mitochondrial disease mitochondrial translation moonlighting proteins unfolded protein response, Unité ARN, WESTHOF

Miao, Z; Westhof, E

RNA Structure: Advances and Assessment of 3D Structure Prediction. Article de journal

Annu Rev Biophys, 46 , p. 483-503, 2017, ISBN: 28375730.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK WESTHOF, Unité ARN, WESTHOF

Miao, Z; Adamiak, R W; Antczak, M; Batey, R T; Becka, A J; Biesiada, M; Boniecki, M J; Bujnicki, J; Chen, S J; Cheng, C Y; Chou, F C; Ferré-D'Amaré, A R; Das, R; Dawson, W K; Feng, D; Dokholyan, N V; Dunin-Horkawicz, S; Geniesse, C; Kappel, K; Kladwang, W; Krokhotin, A; Lach, G E; Major, F; Mann, T H; Magnus, M; Pachulska-Wieczorek, K; Patel, D J; Piccirilli, J A; Popenda, M; Purzycka, K J; Ren, A; Rice, G M; Santalucia, Jr. J; Sarzynska, J; Szachniuk, M; Tandon, A; Trausch, J J; Tian, S; Wang, J; Weeks, K M; Williams, 2nd. B; Xiao, Y; Xu, X; Zhang, D; Zok, T; Westhof, E

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. Article de journal

RNA, 23 (5), p. 655-672, 2017, ISBN: 28138060.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK WESTHOF 3D prediction X-ray structures bioinformatics force fields models structure quality, Unité ARN, WESTHOF

Lai, L B; Tanimoto, A; Lai, S M; Chen, W Y; Marathe, I A; Westhof, E; Wysocki, V H; Gopalan, V

A novel double kink-turn module in euryarchaeal RNase P RNAs. Article de journal

Nucleic Acids Res, 45 (12), p. 7432-7440, 2017, ISBN: 28525600.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Fernandez-Millan, P; Autour, A; Ennifar, E; Westhof, E; Ryckelynck, M

Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI Article de journal

RNA, 23 (12), p. 1788-1795, 2017, ISBN: 28939697.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ENNIFAR WESTHOF RYCKELYNCK DFHBI Spinach crystal structure fluorescence fluorogenic RNA aptamer, RYCKELYNCK, Unité ARN, WESTHOF

Carapito, R; Konantz, M; Paillard, C; Miao, Z; Pichot, A; Leduc, M S; Yang, Y; Bergstrom, K L; Mahoney, D H; Shardy, D L; Alsaleh, G; Naegely, L; Kolmer, A; Paul, N; Hanauer, A; Rolli, V; Müller, J S; Alghisi, E; Sauteur, L; Macquin, C; Morlon, A; Sancho, C S; Amati-Bonneau, P; Procaccio, V; Mosca-Boidron, A L; Marle, N; Osmani, N; Lefebvre, O; Goetz, J G; Unal, S; Akarsu, N A; Radosavljevic, M; Chenard, M P; Rialland, F; Grain, A; Béné, M C; Eveillard, M; Vincent, M; Guy, J; Faivre, L; Thauvin-Robinet, C; Thevenon, J; Myers, K; Fleming, M D; Shimamura, A; Bottollier-Lemallaz, E; Westhof, E; Lengerke, C; Isidor, B; Bahram, S

Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond-like features Article de journal

J Clin Invest, 127 (11), p. 4090-4103, 2017, ISBN: 28972538.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

2016

Westhof, E

Perspectives and Pitfalls in Nucleic Acids Crystallography Book Chapter

Ennifar, E (Ed.): Nucleic Acid Crystallography: Methods and Protocols, 1320 , p. 3-8, Humana Press, NY, 2016, ISBN: 26227033.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN, WESTHOF

Rozov, A; Westhof, E; Yusupov, M; Yusupova, G

The ribosome prohibits the G•U wobble geometry at the first position of the codon-anticodon helix. Article de journal

Nucleic Acids Res, 44 (13), p. 6434-6441, 2016, ISBN: 27174928.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Rozov, A; Demeshkina, N; Khusainov, I; Westhof, E; Yusupov, M; Yusupova, G

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Article de journal

Nat Commun, 21 (7), p. 10457, 2016, ISBN: 26791911.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Miao, Z; Westhof, E

RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database. Article de journal

Nucleic Acids Res, 44 (W1), p. W562-W567, 2016, ISBN: 27084949.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Miao, Z; Cao, Y

Quantifying side-chain conformational variations in protein structure. Article de journal

Sci Rep, 6 , p. 37024, 2016, ISBN: 27845406.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Grosjean, H; Westhof, E

An integrated, structure- and energy-based view of the genetic code. Article de journal

Nucleic Acids Res, 44 (17), p. 8020-8040, 2016, ISBN: 27448410.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

D'Ascenzo, L; Auffinger, P

Anions in Nucleic Acid Crystallography Book Chapter

Ennifar, E (Ed.): Nucleic Acid Crystallography: Methods and Protocols, 1320 , p. 337-351, Humana Press, NY, 2016, ISBN: 26227054.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN, WESTHOF

Autour, A; Westhof, E; Ryckelynck, M

iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications. Article de journal

Nucleic Acids Res, 44 (6), p. 2491-2500, 2016, ISBN: 26932363.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK, Unité ARN, WESTHOF

Rozov, A; Demeshkina, N; Westhof, E; Yusupov, M; Yusupova, G

New Structural Insights into Translational Miscoding. Article de journal

Trends Biochem Sci, 41 (9), p. 798-814, 2016, ISBN: 27372401.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF crystallography decoding ribosome structure translation

Costa, M; Walbott, H; Monachello, D; Westhof, E; Michel, F

Crystal structures of a group II intron lariat primed for reverse splicing. Article de journal

Science, 354 (6316), p. aaf9258, 2016, ISBN: 27934709.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

2015

Westhof, E

RNA structure from deep sequencing. Article de journal

Nat Biotechnol, 33 (9), p. 928-929, 2015, ISBN: 26348961.

Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Westhof, E

Twenty years of RNA crystallography. Article de journal

RNA, 21 (4), p. 486-487, 2015, ISBN: 25780106.

Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Sydow, D; Leonarski, F; D'Ascenzo, L; Auffinger, P

105 Stabilization effects induced by modified nucleotides in tRNA T-loop motifs. Article de journal

J Biomol Struct Dyn, 33 (Suppl 1), p. 66, 2015, ISBN: 26103316.

Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Rozov, A; Demeshkina, N; Westhof, E; Yusupov, M; Yusupova, G

Structural insights into the translational infidelity mechanism. Article de journal

Nat Commun, 6 , p. 7251, 2015, ISBN: 26037619.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Miao, Z; Westhof, E

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs. Article de journal

PLoS Comput Biol, 11 (12), p. e1004639, 2015, ISBN: 26681179.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Miao, Z; Westhof, E

Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score. Article de journal

Nucleic Acids Res, 43 (11), p. 5340-5351, 2015, ISBN: 25940624.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

D'Ascenzo, L; Auffinger, P

106 Ion-π interactions in biomolecular systems. Article de journal

J Biomol Struct Dyn, 33 (Suppl 1), p. 67, 2015, ISBN: 26103317.

Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Ryckelynck, M; Baudrey, S; Rick, C; Marin, A; Coldren, F; Westhof, E; Griffiths, A D

Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions. Article de journal

RNA, 21 (3), p. 458-469, 2015, ISBN: 25605963.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK, Unité ARN, WESTHOF, WESTHOF RNA droplet-based microfluidics high-throughput screening in vitro evolution ribozymes

Miao, Z; Adamiak, R W; Blanchet, M F; Boniecki, M; Bujnicki, J M; Chen, S J; Cheng, C; Chojnowski, G; Chou, F C; Cordero, P; Cruz, J A; Ferré-D'amaré, A R; Das, R; Ding, F; Dokholyan, N V; Dunin-Horkawicz, S; Kladwang, W; Krokhotin, A; Lach, G; Magnus, M; Major, F; Mann, T H; Masquida, B; Matelska, D; Meyer, M; Peselis, A; Popenda, M; Purzycka, K J; Serganov, A; Stasiewicz, J; Szachniuk, M; Tandon, A; Tian, S; Wang, J; Xiao, Y; Xu, X; Zhang, J; Zhao, P; Zok, T; Westhof, E

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. Article de journal

RNA, 21 (6), p. 1066-1084, 2015, ISBN: 25883046.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF 3D prediction X-ray structures bioinformatics force fields models structure quality

2014

Westhof, E; Yusupov, M; Yusupova, G

Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism Article de journal

F1000Prime Rep, 6 , p. 19, 2014, ISBN: 24765524.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Westhof, E

Isostericity and tautomerism of base pairs in nucleic acids. Article de journal

FEBS Lett, 588 (15), p. 2464-2469, 2014, ISBN: 24950426.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Ren, A; Košutić, M; Rajashankar, K R; Frener, M; Santner, T; Westhof, E; Micura, R; Patel, D J

In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme. Article de journal

Nat Commun, 5 , p. 5534, 2014, ISBN: 25410397.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Hartmann, R K; Bindereif, A; Schon, A; Westhof, E (Ed.)

Handbook of RNA Biochemistry Livre

OUVRAGE, Wiley-Vch-Verlag, 2014.

BibTeX | Étiquettes: Unité ARN, WESTHOF

Vicens, Q; Westhof, E

Biogenesis of Circular RNAs. Article de journal

Cell, 159 (1), p. 13-14, 2014, ISBN: 25259915.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF ERIANI

Sesto, N; Touchon, M; Andrade, J M; Kondo, J; Rocha, E P; Arraiano, C M; Archambaud, C; Westhof, E; Romby, P; Cossart, P

A PNPase Dependent CRISPR System in Listeria. Article de journal

PLoS Genet, 10 (1), p. e1004065, 2014, ISBN: 24415952.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN, WESTHOF

Meyer, M; Nielsen, H; Oliéric, V; Roblin, P; Johansen, S D; Westhof, E; Masquida, B

Speciation of a group I intron into a lariat capping ribozyme. Article de journal

Proc Natl Acad Sci U S A, 111 (21), p. 7659-7664, 2014, ISBN: 24821772.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF, WESTHOF GIR1 RNA catalysis RNA structure SAXS crystallography

100 Entrées « 1 de 2 »